IL_4UG0_106

3D structure

PDB id

4UG0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURE OF THE HUMAN 80S RIBOSOME

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAUC*GAC

Length

7 nucleotides

Bulged bases

4UG0|1|L5|A|4292

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UG0_106 not in the Motif Atlas

Geometric match to IL_7A0S_107

Geometric discrepancy: 0.2544

The information below is about IL_7A0S_107

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_71625.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

78

Unit IDs

4UG0|1|L5|G|4291
4UG0|1|L5|A|4292
4UG0|1|L5|U|4293
4UG0|1|L5|C|4294
*
4UG0|1|L5|G|4316
4UG0|1|L5|A|4317
4UG0|1|L5|C|4318

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LT

60S RIBOSOMAL PROTEIN L21

Chain Lb

60S RIBOSOMAL PROTEIN L29

Chain Lo

60S RIBOSOMAL PROTEIN L36A