IL_4UG0_172

3D structure

PDB id

4UG0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURE OF THE HUMAN 80S RIBOSOME

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CCACU*AG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UG0_172 not in the Motif Atlas

Geometric match to IL_5J7L_018

Geometric discrepancy: 0.196

The information below is about IL_5J7L_018

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_03109.3

Basepair signature

cWW-cWS-tWH-cWW-L

Number of instances in this motif group

6

Unit IDs

4UG0|1|S2|C|491
4UG0|1|S2|C|492
4UG0|1|S2|A|493
4UG0|1|S2|C|494
4UG0|1|S2|U|495
*
4UG0|1|S2|A|508
4UG0|1|S2|G|509

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SE

40S RIBOSOMAL PROTEIN S4, X ISOFORM

Chain SJ

40S RIBOSOMAL PROTEIN S9

Chain SY

40S RIBOSOMAL PROTEIN S24