IL_4UG0_243

3D structure

PDB id

4UG0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURE OF THE HUMAN 80S RIBOSOME

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGAAGUCGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UG0_243 not in the Motif Atlas

Homologous match to IL_8P9A_305

Geometric discrepancy: 0.1109

The information below is about IL_8P9A_305

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80252.1

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

10

Unit IDs

4UG0|1|L5|G|2847
4UG0|1|L5|G|2848
4UG0|1|L5|A|2849
4UG0|1|L5|A|2850
4UG0|1|L5|G|2851
4UG0|1|L5|U|2852
4UG0|1|L5|C|2853
4UG0|1|L5|G|2854
4UG0|1|L5|G|2855
*
4UG0|1|L5|C|3837
4UG0|1|L5|U|3838
4UG0|1|L5|G|3839
4UG0|1|L5|U|3840
4UG0|1|L5|C|3841

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LB

60S RIBOSOMAL PROTEIN L3

Chain LV

60S RIBOSOMAL PROTEIN L23