IL_4UG0_263

3D structure

PDB id

4UG0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURE OF THE HUMAN 80S RIBOSOME

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GCCU*GCGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UG0_263 not in the Motif Atlas

Geometric match to IL_6JDV_002

Geometric discrepancy: 0.2845

The information below is about IL_6JDV_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

4UG0|1|S2|G|1229
4UG0|1|S2|C|1230
4UG0|1|S2|C|1231
4UG0|1|S2|U|1232
*
4UG0|1|S2|G|1526
4UG0|1|S2|C|1527
4UG0|1|S2|G|1528
4UG0|1|S2|C|1529

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SQ

40S RIBOSOMAL PROTEIN S16

Chain SS

40S RIBOSOMAL PROTEIN S18

Chain ST

40S RIBOSOMAL PROTEIN S19