IL_4UG0_278

3D structure

PDB id

4UG0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURE OF THE HUMAN 80S RIBOSOME

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UUA*UA

Length

5 nucleotides

Bulged bases

4UG0|1|S2|U|488

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UG0_278 not in the Motif Atlas

Geometric match to IL_8C3A_424

Geometric discrepancy: 0.2878

The information below is about IL_8C3A_424

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

94

Unit IDs

4UG0|1|S2|U|487
4UG0|1|S2|U|488
4UG0|1|S2|A|489
*
4UG0|1|S2|U|511
4UG0|1|S2|A|512

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SE

40S RIBOSOMAL PROTEIN S4, X ISOFORM

Chain SJ

40S RIBOSOMAL PROTEIN S9

Chain SY

40S RIBOSOMAL PROTEIN S24