IL_4UJC_037

3D structure

PDB id

4UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

GGAUC*GGCAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJC_037 not in the Motif Atlas

Geometric match to IL_5TBW_121

Geometric discrepancy: 0.3173

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

4UJC|1|A2|G|1405
4UJC|1|A2|G|1406
4UJC|1|A2|A|1407
4UJC|1|A2|U|1408
4UJC|1|A2|C|1409
*
4UJC|1|A2|G|1435
4UJC|1|A2|G|1436
4UJC|1|A2|C|1437
4UJC|1|A2|A|1438
4UJC|1|A2|C|1439

Current chains

Chain A2

28S RIBOSOMAL RNA

Nearby chains

Chain BQ

60S RIBOSOMAL PROTEIN L18

Chain Bb

60S RIBOSOMAL PROTEIN L29