IL_4UJC_042
3D structure
- PDB id
- 4UJC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.5 Å
Loop
- Sequence
- GAAAG*CUAGUAGC
- Length
- 13 nucleotides
- Bulged bases
- 4UJC|1|A2|A|1629, 4UJC|1|A2|G|1633
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4UJC_042 not in the Motif Atlas
- Homologous match to IL_8C3A_030
- Geometric discrepancy: 0.2894
- The information below is about IL_8C3A_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_17470.7
- Basepair signature
- cWW-tWW-L-R-tWH-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
4UJC|1|A2|G|1501
4UJC|1|A2|A|1502
4UJC|1|A2|A|1503
4UJC|1|A2|A|1504
4UJC|1|A2|G|1505
*
4UJC|1|A2|C|1627
4UJC|1|A2|U|1628
4UJC|1|A2|A|1629
4UJC|1|A2|G|1630
4UJC|1|A2|U|1631
4UJC|1|A2|A|1632
4UJC|1|A2|G|1633
4UJC|1|A2|C|1634
Current chains
- Chain A2
- 28S RIBOSOMAL RNA
Nearby chains
- Chain BC
- 60S RIBOSOMAL PROTEIN L4
- Chain BL
- 60S RIBOSOMAL PROTEIN L13
- Chain BN
- 60S RIBOSOMAL PROTEIN L15
- Chain Ba
- 60S RIBOSOMAL PROTEIN L27A
- Chain Bj
- 60S RIBOSOMAL PROTEIN L37
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