IL_4UJC_046

3D structure

PDB id

4UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

GGG*UAAUC

Length

8 nucleotides

Bulged bases

4UJC|1|A2|G|1604, 4UJC|1|A2|A|1616, 4UJC|1|A2|A|1617, 4UJC|1|A2|U|1618

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJC_046 not in the Motif Atlas

Homologous match to IL_8C3A_036

Geometric discrepancy: 0.2099

The information below is about IL_8C3A_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_90991.8

Basepair signature

cWW-cWW

Number of instances in this motif group

6

Unit IDs

4UJC|1|A2|G|1603
4UJC|1|A2|G|1604
4UJC|1|A2|G|1605
*
4UJC|1|A2|U|1615
4UJC|1|A2|A|1616
4UJC|1|A2|A|1617
4UJC|1|A2|U|1618
4UJC|1|A2|C|1619

Current chains

Chain A2

28S RIBOSOMAL RNA

Nearby chains

Chain BA

60S RIBOSOMAL PROTEIN L8

Chain BN

60S RIBOSOMAL PROTEIN L15

Chain BP

60S RIBOSOMAL PROTEIN L17

Chain Bj

60S RIBOSOMAL PROTEIN L37