IL_4UJC_064
3D structure
- PDB id
- 4UJC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.5 Å
Loop
- Sequence
- GACCCCAGAAAA*UGAAAAUGGAUGGCGC
- Length
- 28 nucleotides
- Bulged bases
- 4UJC|1|A2|C|1913, 4UJC|1|A2|A|2019
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4UJC_064 not in the Motif Atlas
- Geometric match to IL_5TBW_052
- Geometric discrepancy: 0.2327
- The information below is about IL_5TBW_052
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53762.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
4UJC|1|A2|G|1911
4UJC|1|A2|A|1912
4UJC|1|A2|C|1913
4UJC|1|A2|C|1914
4UJC|1|A2|C|1915
4UJC|1|A2|C|1916
4UJC|1|A2|A|1917
4UJC|1|A2|G|1918
4UJC|1|A2|A|1919
4UJC|1|A2|A|1920
4UJC|1|A2|A|1921
4UJC|1|A2|A|1922
*
4UJC|1|A2|U|2016
4UJC|1|A2|G|2017
4UJC|1|A2|A|2018
4UJC|1|A2|A|2019
4UJC|1|A2|A|2020
4UJC|1|A2|A|2021
4UJC|1|A2|U|2022
4UJC|1|A2|G|2023
4UJC|1|A2|G|2024
4UJC|1|A2|A|2025
4UJC|1|A2|U|2026
4UJC|1|A2|G|2027
4UJC|1|A2|G|2028
4UJC|1|A2|C|2029
4UJC|1|A2|G|2030
4UJC|1|A2|C|2031
Current chains
- Chain A2
- 28S RIBOSOMAL RNA
Nearby chains
- Chain A4
- 5S ribosomal RNA; 5S rRNA
- Chain BB
- 60S RIBOSOMAL PROTEIN L3
- Chain BI
- 60S RIBOSOMAL PROTEIN L10
- Chain BO
- 60S RIBOSOMAL PROTEIN L13A
- Chain Bf
- 60S RIBOSOMAL PROTEIN L35A
- Chain Bm
- UBIQUITIN-60S RIBOSOMAL PROTEIN L40
Coloring options: