IL_4UJC_087

3D structure

PDB id

4UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

AGUCGG*CUGU

Length

10 nucleotides

Bulged bases

4UJC|1|A2|G|3808

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJC_087 not in the Motif Atlas

Homologous match to IL_5TBW_077

Geometric discrepancy: 0.1697

The information below is about IL_5TBW_077

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_06455.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

4UJC|1|A2|A|2827
4UJC|1|A2|G|2828
4UJC|1|A2|U|2829
4UJC|1|A2|C|2830
4UJC|1|A2|G|2831
4UJC|1|A2|G|2832
*
4UJC|1|A2|C|3806
4UJC|1|A2|U|3807
4UJC|1|A2|G|3808
4UJC|1|A2|U|3809

Current chains

Chain A2

28S RIBOSOMAL RNA

Nearby chains

Chain BB

60S RIBOSOMAL PROTEIN L3

Chain BV

60S RIBOSOMAL PROTEIN L23