IL_4UJC_092

3D structure

PDB id

4UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

CGAAGG*UGUUGACG

Length

14 nucleotides

Bulged bases

4UJC|1|A2|A|3632, 4UJC|1|A2|U|3648, 4UJC|1|A2|C|3652

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJC_092 not in the Motif Atlas

Homologous match to IL_5TBW_083

Geometric discrepancy: 0.1756

The information below is about IL_5TBW_083

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_64509.1

Basepair signature

cWW-tWW-tWW-tSS-L-cWW

Number of instances in this motif group

2

Unit IDs

4UJC|1|A2|C|3629
4UJC|1|A2|G|3630
4UJC|1|A2|A|3631
4UJC|1|A2|A|3632
4UJC|1|A2|G|3633
4UJC|1|A2|G|3634
*
4UJC|1|A2|U|3646
4UJC|1|A2|G|3647
4UJC|1|A2|U|3648
4UJC|1|A2|U|3649
4UJC|1|A2|G|3650
4UJC|1|A2|A|3651
4UJC|1|A2|C|3652
4UJC|1|A2|G|3653

Current chains

Chain A2

28S RIBOSOMAL RNA

Nearby chains

Chain BA

60S RIBOSOMAL PROTEIN L8

Chain Bp

60S RIBOSOMAL PROTEIN L37A

Chain C1

Small subunit ribosomal RNA; SSU rRNA