IL_4UJC_094

3D structure

PDB id

4UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

UG*UAAA

Length

6 nucleotides

Bulged bases

4UJC|1|A2|A|3715, 4UJC|1|A2|A|3716

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJC_094 not in the Motif Atlas

Homologous match to IL_8C3A_090

Geometric discrepancy: 0.2047

The information below is about IL_8C3A_090

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

4UJC|1|A2|U|3673
4UJC|1|A2|G|3674
*
4UJC|1|A2|U|3714
4UJC|1|A2|A|3715
4UJC|1|A2|A|3716
4UJC|1|A2|A|3717

Current chains

Chain A2

28S RIBOSOMAL RNA

Nearby chains

Chain BA

60S RIBOSOMAL PROTEIN L8