IL_4UJC_097

3D structure

PDB id

4UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

UCAAAGU*AAUGAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJC_097 not in the Motif Atlas

Homologous match to IL_5TBW_088

Geometric discrepancy: 0.231

The information below is about IL_5TBW_088

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36973.8

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

3

Unit IDs

4UJC|1|A2|U|3684
4UJC|1|A2|C|3685
4UJC|1|A2|A|3686
4UJC|1|A2|A|3687
4UJC|1|A2|A|3688
4UJC|1|A2|G|3689
4UJC|1|A2|U|3690
*
4UJC|1|A2|A|3701
4UJC|1|A2|A|3702
4UJC|1|A2|U|3703
4UJC|1|A2|G|3704
4UJC|1|A2|A|3705
4UJC|1|A2|A|3706
4UJC|1|A2|G|3707

Current chains

Chain A2

28S RIBOSOMAL RNA

Nearby chains

Chain BA

60S RIBOSOMAL PROTEIN L8

Chain Bi

60S RIBOSOMAL PROTEIN L36