IL_4UJC_098

3D structure

PDB id

4UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

GG*CUC

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJC_098 not in the Motif Atlas

Geometric match to IL_4C7O_002

Geometric discrepancy: 0.2777

The information below is about IL_4C7O_002

Detailed Annotation

Single stack bend

Broad Annotation

Single stack bend

Motif group

IL_15011.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

54

Unit IDs

4UJC|1|A2|G|3723
4UJC|1|A2|G|3724
*
4UJC|1|A2|C|3738
4UJC|1|A2|U|3739
4UJC|1|A2|C|3740

Current chains

Chain A2

28S RIBOSOMAL RNA

Nearby chains

Chain AA

Transfer RNA; tRNA

Chain AB

EIF5B

Chain C1

Small subunit ribosomal RNA; SSU rRNA