IL_4UJC_112
3D structure
- PDB id
- 4UJC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.5 Å
Loop
- Sequence
- CAG*CGUGG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4UJC_112 not in the Motif Atlas
- Geometric match to IL_4V9F_076
- Geometric discrepancy: 0.2173
- The information below is about IL_4V9F_076
- Detailed Annotation
- Isolated tHS basepair with bulges
- Broad Annotation
- No text annotation
- Motif group
- IL_85599.2
- Basepair signature
- cWW-tHS-cWW
- Number of instances in this motif group
- 9
Unit IDs
4UJC|1|A2|C|4203
4UJC|1|A2|A|4204
4UJC|1|A2|G|4205
*
4UJC|1|A2|C|4223
4UJC|1|A2|G|4224
4UJC|1|A2|U|4225
4UJC|1|A2|G|4226
4UJC|1|A2|G|4227
Current chains
- Chain A2
- 28S RIBOSOMAL RNA
Nearby chains
- Chain A4
- 5S ribosomal RNA; 5S rRNA
- Chain BD
- 60S RIBOSOMAL PROTEIN L5
- Chain BJ
- 60S RIBOSOMAL PROTEIN L11
- Chain BT
- 60S RIBOSOMAL PROTEIN L21
Coloring options: