IL_4UJC_118
3D structure
- PDB id
- 4UJC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.5 Å
Loop
- Sequence
- GUG*UUUUU
- Length
- 8 nucleotides
- Bulged bases
- 4UJC|1|A2|U|4397
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4UJC_118 not in the Motif Atlas
- Homologous match to IL_8C3A_113
- Geometric discrepancy: 0.1872
- The information below is about IL_8C3A_113
- Detailed Annotation
- Major groove minor groove platform with extra cWW
- Broad Annotation
- Major groove minor groove platform with extra cWW
- Motif group
- IL_63959.1
- Basepair signature
- cWW-cSH-cWW-cWW
- Number of instances in this motif group
- 18
Unit IDs
4UJC|1|A2|G|4365
4UJC|1|A2|U|4366
4UJC|1|A2|G|4367
*
4UJC|1|A2|U|4395
4UJC|1|A2|U|4396
4UJC|1|A2|U|4397
4UJC|1|A2|U|4398
4UJC|1|A2|U|4399
Current chains
- Chain A2
- 28S RIBOSOMAL RNA
Nearby chains
- Chain AA
- Transfer RNA; tRNA
- Chain AB
- EIF5B
- Chain BB
- 60S RIBOSOMAL PROTEIN L3
- Chain BI
- 60S RIBOSOMAL PROTEIN L10
Coloring options: