IL_4UJC_133

3D structure

PDB id

4UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

GAUUAU*AGAAUC

Length

12 nucleotides

Bulged bases

4UJC|1|A2|A|4668

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJC_133 not in the Motif Atlas

Geometric match to IL_5J7L_350

Geometric discrepancy: 0.2307

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

4UJC|1|A2|G|4640
4UJC|1|A2|A|4641
4UJC|1|A2|U|4642
4UJC|1|A2|U|4643
4UJC|1|A2|A|4644
4UJC|1|A2|U|4645
*
4UJC|1|A2|A|4665
4UJC|1|A2|G|4666
4UJC|1|A2|A|4667
4UJC|1|A2|A|4668
4UJC|1|A2|U|4669
4UJC|1|A2|C|4670

Current chains

Chain A2

28S RIBOSOMAL RNA

Nearby chains

Chain BH

60S RIBOSOMAL PROTEIN L9

Chain BO

60S RIBOSOMAL PROTEIN L13A

Chain Bm

UBIQUITIN-60S RIBOSOMAL PROTEIN L40