IL_4UJC_158
3D structure
- PDB id
- 4UJC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.5 Å
Loop
- Sequence
- GAUG*CGC
- Length
- 7 nucleotides
- Bulged bases
- 4UJC|1|A4|U|84
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4UJC_158 not in the Motif Atlas
- Homologous match to IL_5TBW_378
- Geometric discrepancy: 0.1583
- The information below is about IL_5TBW_378
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_44258.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 301
Unit IDs
4UJC|1|A4|G|82
4UJC|1|A4|A|83
4UJC|1|A4|U|84
4UJC|1|A4|G|85
*
4UJC|1|A4|C|92
4UJC|1|A4|G|93
4UJC|1|A4|C|94
Current chains
- Chain A4
- 5S RIBOSOMAL RNA
Nearby chains
- Chain A2
- Large subunit ribosomal RNA; LSU rRNA
- Chain BF
- 60S RIBOSOMAL PROTEIN L7
- Chain BI
- 60S RIBOSOMAL PROTEIN L10
- Chain BS
- 60S RIBOSOMAL PROTEIN L18A
Coloring options: