IL_4UJC_182
3D structure
- PDB id
- 4UJC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.5 Å
Loop
- Sequence
- UUUCGA*UG
- Length
- 8 nucleotides
- Bulged bases
- 4UJC|1|C1|U|367, 4UJC|1|C1|U|368
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4UJC_182 not in the Motif Atlas
- Geometric match to IL_4ERD_001
- Geometric discrepancy: 0.3391
- The information below is about IL_4ERD_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_44609.2
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 24
Unit IDs
4UJC|1|C1|U|366
4UJC|1|C1|U|367
4UJC|1|C1|U|368
4UJC|1|C1|C|369
4UJC|1|C1|G|370
4UJC|1|C1|A|371
*
4UJC|1|C1|U|393
4UJC|1|C1|G|394
Current chains
- Chain C1
- 18S RIBOSOMAL RNA
Nearby chains
- Chain A2
- Large subunit ribosomal RNA; LSU rRNA
- Chain BR
- 60S RIBOSOMAL PROTEIN L19
- Chain CI
- 40S RIBOSOMAL PROTEIN ES8
- Chain CL
- 40S RIBOSOMAL PROTEIN US17
Coloring options: