IL_4UJC_185

3D structure

PDB id

4UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

CAU*AAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJC_185 not in the Motif Atlas

Homologous match to IL_4V88_406

Geometric discrepancy: 0.2455

The information below is about IL_4V88_406

Detailed Annotation

Isolated near basepair

Broad Annotation

Isolated near basepair

Motif group

IL_76004.2

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

18

Unit IDs

4UJC|1|C1|C|459
4UJC|1|C1|A|460
4UJC|1|C1|U|461
*
4UJC|1|C1|A|468
4UJC|1|C1|A|469
4UJC|1|C1|G|470

Current chains

Chain C1

18S RIBOSOMAL RNA

Nearby chains

Chain AB

EIF5B

Chain BV

60S RIBOSOMAL PROTEIN L23

Chain CG

40S RIBOSOMAL PROTEIN ES6