IL_4UJC_199

3D structure

PDB id

4UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

AC*GAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJC_199 not in the Motif Atlas

Homologous match to IL_4V88_423

Geometric discrepancy: 0.389

The information below is about IL_4V88_423

Detailed Annotation

Major groove minor groove platform; mini C-loop

Broad Annotation

No text annotation

Motif group

IL_68140.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

19

Unit IDs

4UJC|1|C1|A|802
4UJC|1|C1|C|803
*
4UJC|1|C1|G|860
4UJC|1|C1|A|861
4UJC|1|C1|A|862
4UJC|1|C1|U|863

Current chains

Chain C1

18S RIBOSOMAL RNA

Nearby chains

Chain CH

40S RIBOSOMAL PROTEIN ES7

Chain CL

40S RIBOSOMAL PROTEIN US17

Chain CW

40S RIBOSOMAL PROTEIN US8

Chain CX

40S RIBOSOMAL PROTEIN US12