IL_4UJC_200

3D structure

PDB id

4UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

UUUG*CUAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJC_200 not in the Motif Atlas

Geometric match to IL_7A0S_040

Geometric discrepancy: 0.2917

The information below is about IL_7A0S_040

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

29

Unit IDs

4UJC|1|C1|U|804
4UJC|1|C1|U|805
4UJC|1|C1|U|806
4UJC|1|C1|G|807
*
4UJC|1|C1|C|856
4UJC|1|C1|U|857
4UJC|1|C1|A|858
4UJC|1|C1|G|859

Current chains

Chain C1

18S RIBOSOMAL RNA

Nearby chains

Chain CE

40S RIBOSOMAL PROTEIN ES4

Chain CL

40S RIBOSOMAL PROTEIN US17

Chain CW

40S RIBOSOMAL PROTEIN US8