IL_4UJC_211
3D structure
- PDB id
- 4UJC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.5 Å
Loop
- Sequence
- CGA*UCUUUGG
- Length
- 10 nucleotides
- Bulged bases
- 4UJC|1|C1|C|1153, 4UJC|1|C1|U|1155, 4UJC|1|C1|G|1157
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4UJC_211 not in the Motif Atlas
- Homologous match to IL_4V88_437
- Geometric discrepancy: 0.1639
- The information below is about IL_4V88_437
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_62898.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
4UJC|1|C1|C|1091
4UJC|1|C1|G|1092
4UJC|1|C1|A|1093
*
4UJC|1|C1|U|1152
4UJC|1|C1|C|1153
4UJC|1|C1|U|1154
4UJC|1|C1|U|1155
4UJC|1|C1|U|1156
4UJC|1|C1|G|1157
4UJC|1|C1|G|1158
Current chains
- Chain C1
- 18S RIBOSOMAL RNA
Nearby chains
- Chain CC
- 40S RIBOSOMAL PROTEIN US5
- Chain CL
- 40S RIBOSOMAL PROTEIN US17
- Chain CN
- 40S RIBOSOMAL PROTEIN US15
- Chain CW
- 40S RIBOSOMAL PROTEIN US8
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