IL_4UJC_215
3D structure
- PDB id
- 4UJC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.5 Å
Loop
- Sequence
- GGAGUAUG*UGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4UJC_215 not in the Motif Atlas
- Homologous match to IL_4V88_440
- Geometric discrepancy: 0.1854
- The information below is about IL_4V88_440
- Detailed Annotation
- 8x6 Sarcin-Ricin with inserted Y; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_41756.1
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
4UJC|1|C1|G|1168
4UJC|1|C1|G|1169
4UJC|1|C1|A|1170
4UJC|1|C1|G|1171
4UJC|1|C1|U|1172
4UJC|1|C1|A|1173
4UJC|1|C1|U|1174
4UJC|1|C1|G|1175
*
4UJC|1|C1|U|1186
4UJC|1|C1|G|1187
4UJC|1|C1|A|1188
4UJC|1|C1|A|1189
4UJC|1|C1|A|1190
4UJC|1|C1|C|1191
Current chains
- Chain C1
- 18S RIBOSOMAL RNA
Nearby chains
- Chain Bn
- 60S RIBOSOMAL PROTEIN L41
- Chain CX
- 40S RIBOSOMAL PROTEIN US12
Coloring options: