IL_4UJC_223

3D structure

PDB id

4UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

ACA*UUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJC_223 not in the Motif Atlas

Homologous match to IL_4V88_448

Geometric discrepancy: 0.3371

The information below is about IL_4V88_448

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_30342.2

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

10

Unit IDs

4UJC|1|C1|A|1291
4UJC|1|C1|C|1292
4UJC|1|C1|A|1293
*
4UJC|1|C1|U|1306
4UJC|1|C1|U|1307
4UJC|1|C1|U|1308

Current chains

Chain C1

18S RIBOSOMAL RNA

Nearby chains

Chain CP

40S RIBOSOMAL PROTEIN US19

Chain Cd

40S RIBOSOMAL PROTEIN US14

Chain Cf

40S RIBOSOMAL PROTEIN ES31