IL_4UJC_225
3D structure
- PDB id
- 4UJC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.5 Å
Loop
- Sequence
- GUGCAU*AUGC
- Length
- 10 nucleotides
- Bulged bases
- 4UJC|1|C1|C|1331
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4UJC_225 not in the Motif Atlas
- Geometric match to IL_4V88_473
- Geometric discrepancy: 0.3452
- The information below is about IL_4V88_473
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_36174.1
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 15
Unit IDs
4UJC|1|C1|G|1328
4UJC|1|C1|U|1329
4UJC|1|C1|G|1330
4UJC|1|C1|C|1331
4UJC|1|C1|A|1332
4UJC|1|C1|U|1333
*
4UJC|1|C1|A|1498
4UJC|1|C1|U|1499
4UJC|1|C1|G|1500
4UJC|1|C1|C|1501
Current chains
- Chain C1
- 18S RIBOSOMAL RNA
Nearby chains
- Chain AC
- Internal ribosome entry site; IRES
- Chain CD
- 40S RIBOSOMAL PROTEIN US3
- Chain CK
- 40S RIBOSOMAL PROTEIN ES10
- Chain CU
- 40S RIBOSOMAL PROTEIN US10
- Chain Cd
- 40S RIBOSOMAL PROTEIN US14
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