IL_4UJC_227
3D structure
- PDB id
- 4UJC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.5 Å
Loop
- Sequence
- CG*CAG
- Length
- 5 nucleotides
- Bulged bases
- 4UJC|1|C1|A|1489
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4UJC_227 not in the Motif Atlas
- Homologous match to IL_4V88_452
- Geometric discrepancy: 0.291
- The information below is about IL_4V88_452
- Detailed Annotation
- Single bulged A
- Broad Annotation
- No text annotation
- Motif group
- IL_31462.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 127
Unit IDs
4UJC|1|C1|C|1337
4UJC|1|C1|G|1338
*
4UJC|1|C1|C|1488
4UJC|1|C1|A|1489
4UJC|1|C1|G|1490
Current chains
- Chain C1
- 18S RIBOSOMAL RNA
Nearby chains
- Chain AC
- Internal ribosome entry site; IRES
- Chain CC
- 40S RIBOSOMAL PROTEIN US5
- Chain CD
- 40S RIBOSOMAL PROTEIN US3
- Chain CU
- 40S RIBOSOMAL PROTEIN US10
- Chain Cd
- 40S RIBOSOMAL PROTEIN US14
Coloring options: