IL_4UJC_239
3D structure
- PDB id
- 4UJC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.5 Å
Loop
- Sequence
- GCCC*GUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4UJC_239 not in the Motif Atlas
- Geometric match to IL_4V88_464
- Geometric discrepancy: 0.2094
- The information below is about IL_4V88_464
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_65718.1
- Basepair signature
- cWW-cSH-cWS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
4UJC|1|C1|G|1702
4UJC|1|C1|C|1703
4UJC|1|C1|C|1704
4UJC|1|C1|C|1705
*
4UJC|1|C1|G|1829
4UJC|1|C1|U|1830
4UJC|1|C1|A|1831
4UJC|1|C1|A|1832
4UJC|1|C1|C|1833
Current chains
- Chain C1
- 18S RIBOSOMAL RNA
Nearby chains
- Chain A2
- Large subunit ribosomal RNA; LSU rRNA
- Chain AA
- Transfer RNA; tRNA
- Chain AC
- Internal ribosome entry site; IRES
- Chain Bn
- 60S RIBOSOMAL PROTEIN L41
Coloring options: