IL_4UJC_246

3D structure

PDB id

4UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

UGAG*CGAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJC_246 not in the Motif Atlas

Homologous match to IL_4V88_471

Geometric discrepancy: 0.1417

The information below is about IL_4V88_471

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

4UJC|1|C1|U|1733
4UJC|1|C1|G|1734
4UJC|1|C1|A|1735
4UJC|1|C1|G|1736
*
4UJC|1|C1|C|1798
4UJC|1|C1|G|1799
4UJC|1|C1|A|1800
4UJC|1|C1|A|1801

Current chains

Chain C1

18S RIBOSOMAL RNA

Nearby chains

Chain A2

Large subunit ribosomal RNA; LSU rRNA

Chain CG

40S RIBOSOMAL PROTEIN ES6

Chain CI

40S RIBOSOMAL PROTEIN ES8