IL_4UJC_247

3D structure

PDB id

4UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

CCUC*GACG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJC_247 not in the Motif Atlas

Geometric match to IL_4V88_473

Geometric discrepancy: 0.192

The information below is about IL_4V88_473

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_36174.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

4UJC|1|C1|C|1739
4UJC|1|C1|C|1740
4UJC|1|C1|U|1741
4UJC|1|C1|C|1742
*
4UJC|1|C1|G|1792
4UJC|1|C1|A|1793
4UJC|1|C1|C|1794
4UJC|1|C1|G|1795

Current chains

Chain C1

18S RIBOSOMAL RNA

Nearby chains

Chain A2

Large subunit ribosomal RNA; LSU rRNA

Chain BW

60S RIBOSOMAL PROTEIN L24

Chain CG

40S RIBOSOMAL PROTEIN ES6

Chain CI

40S RIBOSOMAL PROTEIN ES8