IL_4UJC_272
3D structure
- PDB id
- 4UJC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.5 Å
Loop
- Sequence
- CCGACG*CGUCG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4UJC_272 not in the Motif Atlas
- Geometric match to IL_7VYX_004
- Geometric discrepancy: 0.3127
- The information below is about IL_7VYX_004
- Detailed Annotation
- Partly complementary
- Broad Annotation
- Partly complementary
- Motif group
- IL_71154.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 17
Unit IDs
4UJC|1|A2|C|1898
4UJC|1|A2|C|1899
4UJC|1|A2|G|1900
4UJC|1|A2|A|1901
4UJC|1|A2|C|1902
4UJC|1|A2|G|1903
*
4UJC|1|A2|C|2037
4UJC|1|A2|G|2038
4UJC|1|A2|U|2039
4UJC|1|A2|C|2040
4UJC|1|A2|G|2041
Current chains
- Chain A2
- 28S RIBOSOMAL RNA
Nearby chains
- Chain A4
- 5S ribosomal RNA; 5S rRNA
- Chain BF
- 60S RIBOSOMAL PROTEIN L7
- Chain BH
- 60S RIBOSOMAL PROTEIN L9
- Chain BM
- 60S RIBOSOMAL PROTEIN L14
- Chain BO
- 60S RIBOSOMAL PROTEIN L13A
- Chain BS
- 60S RIBOSOMAL PROTEIN L18A
- Chain Bf
- 60S RIBOSOMAL PROTEIN L35A
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