IL_4UJC_297
3D structure
- PDB id
- 4UJC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.5 Å
Loop
- Sequence
- UAA*UCGA
- Length
- 7 nucleotides
- Bulged bases
- 4UJC|1|A3|G|94
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4UJC_297 not in the Motif Atlas
- Homologous match to IL_8P9A_371
- Geometric discrepancy: 0.1719
- The information below is about IL_8P9A_371
- Detailed Annotation
- Isolated non-canonical cWW with bulges
- Broad Annotation
- Isolated non-canonical cWW with bulges
- Motif group
- IL_68118.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 27
Unit IDs
4UJC|1|A3|U|64
4UJC|1|A3|A|65
4UJC|1|A3|A|66
*
4UJC|1|A3|U|92
4UJC|1|A3|C|93
4UJC|1|A3|G|94
4UJC|1|A3|A|95
Current chains
- Chain A3
- 5.8S RIBOSOMAL RNA
Nearby chains
- Chain A2
- Large subunit ribosomal RNA; LSU rRNA
- Chain BY
- 60S RIBOSOMAL PROTEIN L26
- Chain Bh
- 60S RIBOSOMAL PROTEIN UL29
- Chain Bj
- 60S RIBOSOMAL PROTEIN L37
Coloring options: