IL_4UJC_304

3D structure

PDB id

4UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

GGA*UUUU

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJC_304 not in the Motif Atlas

Homologous match to IL_8P9A_418

Geometric discrepancy: 0.4527

The information below is about IL_8P9A_418

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

4UJC|1|C1|G|924
4UJC|1|C1|G|925
4UJC|1|C1|A|926
*
4UJC|1|C1|U|1015
4UJC|1|C1|U|1016
4UJC|1|C1|U|1017
4UJC|1|C1|U|1018

Current chains

Chain C1

18S RIBOSOMAL RNA

Nearby chains

Chain CN

40S RIBOSOMAL PROTEIN US15

Chain CW

40S RIBOSOMAL PROTEIN US8

Chain Cb

40S RIBOSOMAL PROTEIN ES27