IL_4UJC_314

3D structure

PDB id

4UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

ACUG*CAUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJC_314 not in the Motif Atlas

Geometric match to IL_1D4R_001

Geometric discrepancy: 0.188

The information below is about IL_1D4R_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

4UJC|1|C1|A|1537
4UJC|1|C1|C|1538
4UJC|1|C1|U|1539
4UJC|1|C1|G|1540
*
4UJC|1|C1|C|1593
4UJC|1|C1|A|1594
4UJC|1|C1|U|1595
4UJC|1|C1|U|1596

Current chains

Chain C1

18S RIBOSOMAL RNA

Nearby chains

Chain CF

40S RIBOSOMAL PROTEIN US7

Chain CQ

40S RIBOSOMAL PROTEIN US9

Chain CS

40S RIBOSOMAL PROTEIN US13

Chain CT

40S RIBOSOMAL PROTEIN ES19

Chain CZ

40S RIBOSOMAL PROTEIN ES25