IL_4UJD_004
3D structure
- PDB id
- 4UJD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.9 Å
Loop
- Sequence
- CUGAAUUU*AUUAGUCAG
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4UJD_004 not in the Motif Atlas
- Geometric match to IL_4WF9_008
- Geometric discrepancy: 0.2723
- The information below is about IL_4WF9_008
- Detailed Annotation
- 9x8 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_93502.1
- Basepair signature
- cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
4UJD|1|A2|C|30
4UJD|1|A2|U|31
4UJD|1|A2|G|32
4UJD|1|A2|A|33
4UJD|1|A2|A|34
4UJD|1|A2|U|35
4UJD|1|A2|U|36
4UJD|1|A2|U|37
*
4UJD|1|A2|A|44
4UJD|1|A2|U|45
4UJD|1|A2|U|46
4UJD|1|A2|A|47
4UJD|1|A2|G|48
4UJD|1|A2|U|49
4UJD|1|A2|C|50
4UJD|1|A2|A|51
4UJD|1|A2|G|52
Current chains
- Chain A2
- 28S Ribosomal RNA
Nearby chains
- Chain AL
- 60S RIBOSOMAL PROTEIN L13
- Chain AN
- 60S RIBOSOMAL PROTEIN L15
- Chain Aa
- 60S RIBOSOMAL PROTEIN L27A
- Chain Aj
- 60S RIBOSOMAL PROTEIN L37
- Chain Ao
- 60S RIBOSOMAL PROTEIN L36A
Coloring options: