IL_4UJD_005
3D structure
- PDB id
- 4UJD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.9 Å
Loop
- Sequence
- CUCAGUAA*UGAACAG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4UJD_005 not in the Motif Atlas
- Homologous match to IL_8C3A_006
- Geometric discrepancy: 0.2775
- The information below is about IL_8C3A_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_88613.1
- Basepair signature
- cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 2
Unit IDs
4UJD|1|A2|C|81
4UJD|1|A2|U|82
4UJD|1|A2|C|83
4UJD|1|A2|A|84
4UJD|1|A2|G|85
4UJD|1|A2|U|86
4UJD|1|A2|A|87
4UJD|1|A2|A|88
*
4UJD|1|A2|U|96
4UJD|1|A2|G|97
4UJD|1|A2|A|98
4UJD|1|A2|A|99
4UJD|1|A2|C|100
4UJD|1|A2|A|101
4UJD|1|A2|G|102
Current chains
- Chain A2
- 28S Ribosomal RNA
Nearby chains
- Chain AL
- 60S RIBOSOMAL PROTEIN L13
- Chain AN
- 60S RIBOSOMAL PROTEIN L15
- Chain AQ
- 60S RIBOSOMAL PROTEIN L18
- Chain Aa
- 60S RIBOSOMAL PROTEIN L27A
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