IL_4UJD_033

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

CCUC*GUCG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJD_033 not in the Motif Atlas

Geometric match to IL_1L9A_005

Geometric discrepancy: 0.346

The information below is about IL_1L9A_005

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

4UJD|1|A2|C|1092
4UJD|1|A2|C|1093
4UJD|1|A2|U|1094
4UJD|1|A2|C|1095
*
4UJD|1|A2|G|1138
4UJD|1|A2|U|1139
4UJD|1|A2|C|1140
4UJD|1|A2|G|1141

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains