IL_4UJD_042
3D structure
- PDB id
- 4UJD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.9 Å
Loop
- Sequence
- GAAAG*CUAGUAGC
- Length
- 13 nucleotides
- Bulged bases
- 4UJD|1|A2|A|1629, 4UJD|1|A2|G|1633
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4UJD_042 not in the Motif Atlas
- Geometric match to IL_7RQB_018
- Geometric discrepancy: 0.2238
- The information below is about IL_7RQB_018
- Detailed Annotation
- tHW-tHW cross-strand stack
- Broad Annotation
- No text annotation
- Motif group
- IL_17470.6
- Basepair signature
- cWW-tWW-L-R-tWH-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
4UJD|1|A2|G|1501
4UJD|1|A2|A|1502
4UJD|1|A2|A|1503
4UJD|1|A2|A|1504
4UJD|1|A2|G|1505
*
4UJD|1|A2|C|1627
4UJD|1|A2|U|1628
4UJD|1|A2|A|1629
4UJD|1|A2|G|1630
4UJD|1|A2|U|1631
4UJD|1|A2|A|1632
4UJD|1|A2|G|1633
4UJD|1|A2|C|1634
Current chains
- Chain A2
- 28S Ribosomal RNA
Nearby chains
- Chain AC
- 60S RIBOSOMAL PROTEIN L4
- Chain AL
- 60S RIBOSOMAL PROTEIN L13
- Chain AN
- 60S RIBOSOMAL PROTEIN L15
- Chain Aa
- 60S RIBOSOMAL PROTEIN L27A
- Chain Aj
- 60S RIBOSOMAL PROTEIN L37
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