IL_4UJD_049
3D structure
- PDB id
- 4UJD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.9 Å
Loop
- Sequence
- UCCA*UGCGA
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4UJD_049 not in the Motif Atlas
- Geometric match to IL_7EU9_001
- Geometric discrepancy: 0.3596
- The information below is about IL_7EU9_001
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_44609.2
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 24
Unit IDs
4UJD|1|A2|U|1672
4UJD|1|A2|C|1673
4UJD|1|A2|C|1701
4UJD|1|A2|A|1702
*
4UJD|1|A2|U|1817
4UJD|1|A2|G|1818
4UJD|1|A2|C|1819
4UJD|1|A2|G|1820
4UJD|1|A2|A|1821
Current chains
- Chain A2
- 28S Ribosomal RNA
Nearby chains
- Chain AF
- 60S RIBOSOMAL PROTEIN L7
- Chain AQ
- 60S RIBOSOMAL PROTEIN L18
- Chain AT
- 60S RIBOSOMAL PROTEIN L21
- Chain Ab
- 60S RIBOSOMAL PROTEIN L29
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