IL_4UJD_059

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

CACU*ACUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJD_059 not in the Motif Atlas

Geometric match to IL_4K27_001

Geometric discrepancy: 0.245

The information below is about IL_4K27_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

4UJD|1|A2|C|1835
4UJD|1|A2|A|1836
4UJD|1|A2|C|1837
4UJD|1|A2|U|1838
*
4UJD|1|A2|A|1852
4UJD|1|A2|C|1853
4UJD|1|A2|U|1854
4UJD|1|A2|G|1855

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain A4

5S ribosomal RNA; 5S rRNA

Chain AF

60S RIBOSOMAL PROTEIN L7

Chain Ab

60S RIBOSOMAL PROTEIN L29