IL_4UJD_060
3D structure
- PDB id
- 4UJD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.9 Å
Loop
- Sequence
- UUAAG*CCAUA
- Length
- 10 nucleotides
- Bulged bases
- 4UJD|1|A2|U|2048
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4UJD_060 not in the Motif Atlas
- Homologous match to IL_8C3A_051
- Geometric discrepancy: 0.1907
- The information below is about IL_8C3A_051
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_89002.4
- Basepair signature
- cWW-tWH-cWW-L-cWW-tHS
- Number of instances in this motif group
- 15
Unit IDs
4UJD|1|A2|U|1883
4UJD|1|A2|U|1884
4UJD|1|A2|A|1885
4UJD|1|A2|A|1886
4UJD|1|A2|G|1887
*
4UJD|1|A2|C|2045
4UJD|1|A2|C|2046
4UJD|1|A2|A|2047
4UJD|1|A2|U|2048
4UJD|1|A2|A|2049
Current chains
- Chain A2
- 28S Ribosomal RNA
Nearby chains
- Chain A4
- 5S ribosomal RNA; 5S rRNA
- Chain AF
- 60S RIBOSOMAL PROTEIN L7
- Chain Ae
- 60S RIBOSOMAL PROTEIN L32
- Chain Af
- 60S RIBOSOMAL PROTEIN L35A
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