IL_4UJD_064

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

GACCCCAGAAAA*UGAAAAUGGAUGGCGC

Length

28 nucleotides

Bulged bases

4UJD|1|A2|C|1913, 4UJD|1|A2|A|2019

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJD_064 not in the Motif Atlas

Geometric match to IL_5TBW_052

Geometric discrepancy: 0.2327

The information below is about IL_5TBW_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_53762.1

Basepair signature

cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

4UJD|1|A2|G|1911
4UJD|1|A2|A|1912
4UJD|1|A2|C|1913
4UJD|1|A2|C|1914
4UJD|1|A2|C|1915
4UJD|1|A2|C|1916
4UJD|1|A2|A|1917
4UJD|1|A2|G|1918
4UJD|1|A2|A|1919
4UJD|1|A2|A|1920
4UJD|1|A2|A|1921
4UJD|1|A2|A|1922
*
4UJD|1|A2|U|2016
4UJD|1|A2|G|2017
4UJD|1|A2|A|2018
4UJD|1|A2|A|2019
4UJD|1|A2|A|2020
4UJD|1|A2|A|2021
4UJD|1|A2|U|2022
4UJD|1|A2|G|2023
4UJD|1|A2|G|2024
4UJD|1|A2|A|2025
4UJD|1|A2|U|2026
4UJD|1|A2|G|2027
4UJD|1|A2|G|2028
4UJD|1|A2|C|2029
4UJD|1|A2|G|2030
4UJD|1|A2|C|2031

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain A4

5S ribosomal RNA; 5S rRNA

Chain AB

60S RIBOSOMAL PROTEIN L3

Chain AI

60S RIBOSOMAL PROTEIN L10

Chain AO

60S RIBOSOMAL PROTEIN L13A

Chain Af

60S RIBOSOMAL PROTEIN L35A

Chain Am

UBIQUITIN-60S RIBOSOMAL PROTEIN L40