IL_4UJD_071

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

GUAGUAGC*GCGAAAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJD_071 not in the Motif Atlas

Geometric match to IL_4V9F_012

Geometric discrepancy: 0.2913

The information below is about IL_4V9F_012

Detailed Annotation

8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_59724.1

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW

Number of instances in this motif group

1

Unit IDs

4UJD|1|A2|G|2335
4UJD|1|A2|U|2336
4UJD|1|A2|A|2337
4UJD|1|A2|G|2338
4UJD|1|A2|U|2339
4UJD|1|A2|A|2340
4UJD|1|A2|G|2341
4UJD|1|A2|C|2342
*
4UJD|1|A2|G|3826
4UJD|1|A2|C|3827
4UJD|1|A2|G|3828
4UJD|1|A2|A|3829
4UJD|1|A2|A|3830
4UJD|1|A2|A|3831
4UJD|1|A2|C|3832

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain AC

60S RIBOSOMAL PROTEIN L4

Chain AP

60S RIBOSOMAL PROTEIN L17