IL_4UJD_073

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

UGAAC*GAA

Length

8 nucleotides

Bulged bases

4UJD|1|A2|A|2405

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJD_073 not in the Motif Atlas

Geometric match to IL_7RQB_051

Geometric discrepancy: 0.2871

The information below is about IL_7RQB_051

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.6

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

14

Unit IDs

4UJD|1|A2|U|2392
4UJD|1|A2|G|2393
4UJD|1|A2|A|2394
4UJD|1|A2|A|2395
4UJD|1|A2|C|2396
*
4UJD|1|A2|G|2404
4UJD|1|A2|A|2405
4UJD|1|A2|A|2406

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain AP

60S RIBOSOMAL PROTEIN L17

Chain AR

60S RIBOSOMAL PROTEIN L19

Chain Al

60S RIBOSOMAL PROTEIN L39