IL_4UJD_074
3D structure
- PDB id
- 4UJD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.9 Å
Loop
- Sequence
- CUGAG*CGAAAG
- Length
- 11 nucleotides
- Bulged bases
- 4UJD|1|A2|A|2489, 4UJD|1|A2|A|2490
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4UJD_074 not in the Motif Atlas
- Homologous match to IL_8C3A_067
- Geometric discrepancy: 0.1662
- The information below is about IL_8C3A_067
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_89002.4
- Basepair signature
- cWW-tWH-cWW-L-cWW-tHS
- Number of instances in this motif group
- 15
Unit IDs
4UJD|1|A2|C|2423
4UJD|1|A2|U|2424
4UJD|1|A2|G|2425
4UJD|1|A2|A|2426
4UJD|1|A2|G|2427
*
4UJD|1|A2|C|2486
4UJD|1|A2|G|2487
4UJD|1|A2|A|2488
4UJD|1|A2|A|2489
4UJD|1|A2|A|2490
4UJD|1|A2|G|2491
Current chains
- Chain A2
- 28S Ribosomal RNA
Nearby chains
- Chain A3
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain AA
- 60S RIBOSOMAL PROTEIN L8
- Chain Ag
- 60S RIBOSOMAL PROTEIN L34
- Chain Al
- 60S RIBOSOMAL PROTEIN L39
Coloring options: