IL_4UJD_077

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

GGCG*CUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJD_077 not in the Motif Atlas

Geometric match to IL_7A0S_107

Geometric discrepancy: 0.3745

The information below is about IL_7A0S_107

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_71625.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

78

Unit IDs

4UJD|1|A2|G|2523
4UJD|1|A2|G|2524
4UJD|1|A2|C|2525
4UJD|1|A2|G|2526
*
4UJD|1|A2|C|2745
4UJD|1|A2|U|2746
4UJD|1|A2|C|2747

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain Ag

60S RIBOSOMAL PROTEIN L34

Chain Ak

60S RIBOSOMAL PROTEIN L38