IL_4UJD_087

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

AGUCGG*CUGU

Length

10 nucleotides

Bulged bases

4UJD|1|A2|G|3808

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJD_087 not in the Motif Atlas

Geometric match to IL_5TBW_077

Geometric discrepancy: 0.1696

The information below is about IL_5TBW_077

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_06455.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

4UJD|1|A2|A|2827
4UJD|1|A2|G|2828
4UJD|1|A2|U|2829
4UJD|1|A2|C|2830
4UJD|1|A2|G|2831
4UJD|1|A2|G|2832
*
4UJD|1|A2|C|3806
4UJD|1|A2|U|3807
4UJD|1|A2|G|3808
4UJD|1|A2|U|3809

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain AB

60S RIBOSOMAL PROTEIN L3

Chain AV

60S RIBOSOMAL PROTEIN L23