IL_4UJD_088

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

4UJD|1|A2|U|2857

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJD_088 not in the Motif Atlas

Homologous match to IL_8C3A_084

Geometric discrepancy: 0.1482

The information below is about IL_8C3A_084

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65969.4

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

4UJD|1|A2|C|2844
4UJD|1|A2|G|2845
4UJD|1|A2|U|2846
4UJD|1|A2|A|2847
4UJD|1|A2|A|2848
4UJD|1|A2|C|2849
*
4UJD|1|A2|G|2854
4UJD|1|A2|G|2855
4UJD|1|A2|A|2856
4UJD|1|A2|U|2857
4UJD|1|A2|A|2858
4UJD|1|A2|A|2859
4UJD|1|A2|G|2860

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain An

60S RIBOSOMAL PROTEIN L41

Chain Ap

60S RIBOSOMAL PROTEIN L37A

Chain C1

Small subunit ribosomal RNA; SSU rRNA