IL_4UJD_092

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

CGAAGG*UGUUGACG

Length

14 nucleotides

Bulged bases

4UJD|1|A2|A|3632, 4UJD|1|A2|U|3648, 4UJD|1|A2|C|3652

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJD_092 not in the Motif Atlas

Homologous match to IL_5TBW_083

Geometric discrepancy: 0.1756

The information below is about IL_5TBW_083

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_64509.1

Basepair signature

cWW-tWW-tWW-tSS-L-cWW

Number of instances in this motif group

2

Unit IDs

4UJD|1|A2|C|3629
4UJD|1|A2|G|3630
4UJD|1|A2|A|3631
4UJD|1|A2|A|3632
4UJD|1|A2|G|3633
4UJD|1|A2|G|3634
*
4UJD|1|A2|U|3646
4UJD|1|A2|G|3647
4UJD|1|A2|U|3648
4UJD|1|A2|U|3649
4UJD|1|A2|G|3650
4UJD|1|A2|A|3651
4UJD|1|A2|C|3652
4UJD|1|A2|G|3653

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain AA

60S RIBOSOMAL PROTEIN L8

Chain Ap

60S RIBOSOMAL PROTEIN L37A