IL_4UJD_097

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

UCAAAGU*AAUGAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJD_097 not in the Motif Atlas

Homologous match to IL_5TBW_088

Geometric discrepancy: 0.2309

The information below is about IL_5TBW_088

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36973.8

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

3

Unit IDs

4UJD|1|A2|U|3684
4UJD|1|A2|C|3685
4UJD|1|A2|A|3686
4UJD|1|A2|A|3687
4UJD|1|A2|A|3688
4UJD|1|A2|G|3689
4UJD|1|A2|U|3690
*
4UJD|1|A2|A|3701
4UJD|1|A2|A|3702
4UJD|1|A2|U|3703
4UJD|1|A2|G|3704
4UJD|1|A2|A|3705
4UJD|1|A2|A|3706
4UJD|1|A2|G|3707

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain AA

60S RIBOSOMAL PROTEIN L8

Chain Ai

60S RIBOSOMAL PROTEIN L36